How to download sra file

File information. Structured data. Captions English Add a one-line explanation of what this file represents. It is recommended to use the other file. Please note that deleting superseded images requires consent. This work is in the public domain in the United States because it was published or registered with the U. Given an accession, this program will present a list of associated read or analysis files you can download.

Globus provides a more user-friendly, feature-rich directory interface for interacting with the FTP server. These are simple-to-run scripts which allow accession-based data download commands with the option to create more complex commands. Read more about this page in the enaBrowserTools Guide.

A file can be downloaded with wget simply by specifying its location:. The following is a TSV tab separated values file with all metadata fields for the selected samples.

SRA-Explorer saved datasets. Search for:. Max Results. View saved datasets. Please see the NCBI SRA page Connection Timeouts Estimating space requirements fasterq-dump takes significantly more space than the old fastq-dump, as it requires temporary space in addition to the final output. As a rule of thumb, the fasterq-dump guide suggests getting the size of the accession using 'vdb-dump', then estimating 7x for the output and 6x for the temp files.

It is also recommended that the output file and temporary files be on different filesystems, as in the examples below. Downloading data from SRA You can download SRA fastq files using the fasterq-dump tool, which will download the fastq file into your current working directory by default. Note: the old fastq-dump is being deprecated. For example, on Helix, the interactive data transfer system, you can download as in the example below. Sep 24, Sep 9, VDB don't run perl -w.

Jan 15, View code. October 7, August 17, SRA Toolkit 2. March 15, SRA Toolkit 2. December 16, SRA Toolkit 2. June 29, SRA Toolkit 2. May 20, SRA Toolkit 2. May 18, SRA Toolkit 2.